sec
Division 1 (BCS) Notre Dame 8 championships Division 1 AA (FCS) Georgia Southern 6 championships Division II North Dakota State 5 championships Division III Mount Union 10 championships
Alabama
Bob stoops
The University of Michigan has the most with 11 national championships the last in 1997. GO BLUE
SEC
GA Southern
Larry Kehres, of Mount Union College, Division III, with 9 national championships.
116 national championships since 1895 in football. However most teams don't count their national championship pre ww2!
If we restrict it to AP/Coaches poll and/ or BCS National Championships for division one college football since 1950 then the breakdown is as follows:BEAR BRYANT 6JOHN MCKAY 3NICK SABAN 3BUD WILKERSON 3DARRELL ROYAL 3BARRY SWITZER 3TOM OSBORNE 3WOODY HAYES 3
Princeton has the most with 28. http://en.wikipedia.org/wiki/College_football_national_championships_in_NCAA_Division_I_FBS#National_championship_claims_by_school
Alabama