University of southern California
What coach in Division II football has the most wins?
Michigan with 25 (but, since 1990, it's the Auburn Tigers with 3- WAR EAGLE!!!)
The college football team that had the most wins during the 1990's was, Florida State.
Joe Paterno. He has the most wins against Division 1A teams and he also is the Division 1A coach with the most wins against teams of any Division.
Yale University is the school with the most national championships in football. The school with the most wins in NCAA Division I football is the University of Michigan.