Princeton claims 28 national championships since 1869, the first season of College Football.
However, since 1936 (when the AP Poll began), both Alabama and Notre Dame are tied with 8 consensus titles.
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Alabama. The University of Alabama has 12 National Championships
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The University of Alabama Crimson Tide have the most national championships in football with twelve.
Yale has the most wins in the national championships in college football. They have won 17. Unfortunately for them the last one was in 1909.
Larry Kehres, of Mount Union College, Division III, with 9 national championships.
The University of Michigan has the most with 11 national championships the last in 1997. GO BLUE
In college football Alabama has the most national championships with 13 while Notre Dame comes in second with 12. In College Hockey Bemidji State University has 13 national championships