In respect to total number of wins as of 2013, the top three NCAA Division 1 Baseball teams of all-time are Fordham University (nearly 4,300), the University of Texas (3,246), and Southern California University (nearly 2,700). Winningest teams in college baseball may also be ranked based on overall win/loss percentage, which would put the University of Texas in the top spot.
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Not even close: University of Southern California has won 12 times; number two (tied), LSU and Texas, are at six.