In his PRO career? Only the Indianapolis Colts. However, depending on your definition of a "team", it could be said that he also played on the AFC All-Star Team. At the college level, Manning played his entire career with the University of Tennessee (not sure if he was on any college-level all-star team). At the high school level, Manning played for Isidore Newman High School in New Orleans. He probably also played football in Junior High (middle school), and maybe in some form of little-league football, but I can find no record of which schools/teams he might have played for at those levels.
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Eli has only played for the Giants.
He was drafted by the Chargers, but had stated from day 1 that he wouldn't play for them, so after they drafted him, he was traded to the Giants for Philip Rivers and draft picks.
Peyton played for the Colts and now the broncos and Eli is playing on the Giants