He has won over 40 awards. You can find a list of them by going to Wikipedia.com and searching on Peyton Manning, then follow the link to Career Awards And Records.
He is a 3 time MVP(2003,2004,2008)
Four, in 2003, 2004, 2008 and 2009.
The New York Giants played against the Indianapolis Colts on September 10, 2006 and the Colts won. So, Peyton did beat Eli.
'95 '96 & '97
The ones who won the Best Male Athlete for Nickelodeon's Kids' Choice Awards were Lebron James for the 2013 Awards, Tim Tebow for the 2012 Awards, Shaquille O'Neal in 2011 for the Awards, Ryan Sheckler in 2010 for the awards, Peyton Manning in 2009 and Tony Hawk for the 2008 Kids' Choice Awards.
Peyton Manning has won the Pro Bowl MVP one (2004), The NFL MVP 4 times (2003, 2004, 2008, 2009) Super Bowl MVP (XLI), NFL Comeback of the Year Award (2012), AFC Player of the Year Award 6 Times (1999, 2003, 2004, 2005, 2008, 2009)
He won an award from SWAC, the Nashville Sports person of the year, and NFL MVP from both the league (he shared this award with Peyton Manning), and MVP from the Associated Press.
Tom Brady of the New England Patriots received four Super Bowl Most Valuable Player awards. Joe Montana of the San Francisco 49ers won three.
1995,1996,1997
He is a two time Super bowl MVP and a four time pro bowler.
There are several entities that award an MVP to an NFL player. Currently, the Associated Press, Pro Football Writers of America, and Maxwell Football Club give out an NFL MVP award. As of the 2007 season, no player has won an MVP award more than three times. Those that have won an MVP award three times are: Brett Favre, Jim Brown, John Unitas, Randall Cunningham, and Otto Graham. *Peyton Manning has won 4 MVP awards as of 2010