For a season, no one.
Through the 2008 season, the Mets have had three 40 home runs seasons:
1) Todd Hundley - 41 in 1996
2) Mike Piazza - 40 in 1999
3) Carlos Beltran - 41 in 2006
None of the three players listed above played for the Yankees.
For a career, Darryl Strawberry hit 252 home runs for the Mets and 41 home runs for the Yankees.
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