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Anonymous
Through the 2008 season, two.
They defeated Pittsburg State to win the Division II championship in 2004 and Northwest Missouri State to win in 2007.
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3
3 NCAA Div I-AA National Championships - Back to Back to Back - 2005-2006-2007
2
22
116 national championships since 1895 in football. However most teams don't count their national championship pre ww2!