Stanford, with 99 total national championships. UCLA is first with 106, and USC is third with 91.
Stanford with 540
Alabama
UCLA they have 101 national championships in all sports. (11 in basketball)
Depends on which sport or sports you are asking about.
ucla
UCLA with 100
UCLA
Gators
MIT?
UCLA
40 national championships, 38 ncaa national championships
UVA has won a total of 16 national championships in team sports. 6 of them were in soccer.