For major BCS conference teams, the Texas Longhorns have the best record at 103-25 through the 2008 season. Boise State, a Division I school not in a BCS conference is 102-24. If you want to know the best record regardless of the level, by far, the best College Football record in the past 10 years belongs to the Division III Mount Union Purple Raiders with 111 wins and only 3 losses.
USC Trojans
Best College football record over the last 5 years
The University of Michigan is the most winningest football program in the history of the NCAA.
florida
THE FLORIDA GATORS
the ACC
Alabama
Texas
Boise State
Nebraska Cornhuskers
74 in the last 50 years
Boise State University in Idaho has become the unlikely college football power over the last 10 years.