The University of Alabama Crimson Tide have the most national championships in football with twelve.
Larry Kehres, of Mount Union College, Division III, with 9 national championships.
The University of Michigan has the most with 11 national championships the last in 1997. GO BLUE
Alabama. The University of Alabama has 12 National Championships
In college football Alabama has the most national championships with 13 while Notre Dame comes in second with 12. In College Hockey Bemidji State University has 13 national championships
116 national championships since 1895 in football. However most teams don't count their national championship pre ww2!
The college football national championship is the highest team award in the sport. The Fighting Irish of Notre Dame has won the most championships in history.